autotuned_index.h
20.1 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
/***********************************************************************
* Software License Agreement (BSD License)
*
* Copyright 2008-2009 Marius Muja (mariusm@cs.ubc.ca). All rights reserved.
* Copyright 2008-2009 David G. Lowe (lowe@cs.ubc.ca). All rights reserved.
*
* THE BSD LICENSE
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions
* are met:
*
* 1. Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in the
* documentation and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
* IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
* OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
* IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
* INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
* NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
* THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*************************************************************************/
#ifndef OPENCV_FLANN_AUTOTUNED_INDEX_H_
#define OPENCV_FLANN_AUTOTUNED_INDEX_H_
#include "general.h"
#include "nn_index.h"
#include "ground_truth.h"
#include "index_testing.h"
#include "sampling.h"
#include "kdtree_index.h"
#include "kdtree_single_index.h"
#include "kmeans_index.h"
#include "composite_index.h"
#include "linear_index.h"
#include "logger.h"
namespace cvflann
{
template<typename Distance>
NNIndex<Distance>* create_index_by_type(const Matrix<typename Distance::ElementType>& dataset, const IndexParams& params, const Distance& distance);
struct AutotunedIndexParams : public IndexParams
{
AutotunedIndexParams(float target_precision = 0.8, float build_weight = 0.01, float memory_weight = 0, float sample_fraction = 0.1)
{
(*this)["algorithm"] = FLANN_INDEX_AUTOTUNED;
// precision desired (used for autotuning, -1 otherwise)
(*this)["target_precision"] = target_precision;
// build tree time weighting factor
(*this)["build_weight"] = build_weight;
// index memory weighting factor
(*this)["memory_weight"] = memory_weight;
// what fraction of the dataset to use for autotuning
(*this)["sample_fraction"] = sample_fraction;
}
};
template <typename Distance>
class AutotunedIndex : public NNIndex<Distance>
{
public:
typedef typename Distance::ElementType ElementType;
typedef typename Distance::ResultType DistanceType;
AutotunedIndex(const Matrix<ElementType>& inputData, const IndexParams& params = AutotunedIndexParams(), Distance d = Distance()) :
dataset_(inputData), distance_(d)
{
target_precision_ = get_param(params, "target_precision",0.8f);
build_weight_ = get_param(params,"build_weight", 0.01f);
memory_weight_ = get_param(params, "memory_weight", 0.0f);
sample_fraction_ = get_param(params,"sample_fraction", 0.1f);
bestIndex_ = NULL;
}
AutotunedIndex(const AutotunedIndex&);
AutotunedIndex& operator=(const AutotunedIndex&);
virtual ~AutotunedIndex()
{
if (bestIndex_ != NULL) {
delete bestIndex_;
bestIndex_ = NULL;
}
}
/**
* Method responsible with building the index.
*/
virtual void buildIndex()
{
bestParams_ = estimateBuildParams();
Logger::info("----------------------------------------------------\n");
Logger::info("Autotuned parameters:\n");
print_params(bestParams_);
Logger::info("----------------------------------------------------\n");
bestIndex_ = create_index_by_type(dataset_, bestParams_, distance_);
bestIndex_->buildIndex();
speedup_ = estimateSearchParams(bestSearchParams_);
Logger::info("----------------------------------------------------\n");
Logger::info("Search parameters:\n");
print_params(bestSearchParams_);
Logger::info("----------------------------------------------------\n");
}
/**
* Saves the index to a stream
*/
virtual void saveIndex(FILE* stream)
{
save_value(stream, (int)bestIndex_->getType());
bestIndex_->saveIndex(stream);
save_value(stream, get_param<int>(bestSearchParams_, "checks"));
}
/**
* Loads the index from a stream
*/
virtual void loadIndex(FILE* stream)
{
int index_type;
load_value(stream, index_type);
IndexParams params;
params["algorithm"] = (flann_algorithm_t)index_type;
bestIndex_ = create_index_by_type<Distance>(dataset_, params, distance_);
bestIndex_->loadIndex(stream);
int checks;
load_value(stream, checks);
bestSearchParams_["checks"] = checks;
}
/**
* Method that searches for nearest-neighbors
*/
virtual void findNeighbors(ResultSet<DistanceType>& result, const ElementType* vec, const SearchParams& searchParams)
{
int checks = get_param<int>(searchParams,"checks",FLANN_CHECKS_AUTOTUNED);
if (checks == FLANN_CHECKS_AUTOTUNED) {
bestIndex_->findNeighbors(result, vec, bestSearchParams_);
}
else {
bestIndex_->findNeighbors(result, vec, searchParams);
}
}
IndexParams getParameters() const
{
return bestIndex_->getParameters();
}
SearchParams getSearchParameters() const
{
return bestSearchParams_;
}
float getSpeedup() const
{
return speedup_;
}
/**
* Number of features in this index.
*/
virtual size_t size() const
{
return bestIndex_->size();
}
/**
* The length of each vector in this index.
*/
virtual size_t veclen() const
{
return bestIndex_->veclen();
}
/**
* The amount of memory (in bytes) this index uses.
*/
virtual int usedMemory() const
{
return bestIndex_->usedMemory();
}
/**
* Algorithm name
*/
virtual flann_algorithm_t getType() const
{
return FLANN_INDEX_AUTOTUNED;
}
private:
struct CostData
{
float searchTimeCost;
float buildTimeCost;
float memoryCost;
float totalCost;
IndexParams params;
};
void evaluate_kmeans(CostData& cost)
{
StartStopTimer t;
int checks;
const int nn = 1;
Logger::info("KMeansTree using params: max_iterations=%d, branching=%d\n",
get_param<int>(cost.params,"iterations"),
get_param<int>(cost.params,"branching"));
KMeansIndex<Distance> kmeans(sampledDataset_, cost.params, distance_);
// measure index build time
t.start();
kmeans.buildIndex();
t.stop();
float buildTime = (float)t.value;
// measure search time
float searchTime = test_index_precision(kmeans, sampledDataset_, testDataset_, gt_matches_, target_precision_, checks, distance_, nn);
float datasetMemory = float(sampledDataset_.rows * sampledDataset_.cols * sizeof(float));
cost.memoryCost = (kmeans.usedMemory() + datasetMemory) / datasetMemory;
cost.searchTimeCost = searchTime;
cost.buildTimeCost = buildTime;
Logger::info("KMeansTree buildTime=%g, searchTime=%g, build_weight=%g\n", buildTime, searchTime, build_weight_);
}
void evaluate_kdtree(CostData& cost)
{
StartStopTimer t;
int checks;
const int nn = 1;
Logger::info("KDTree using params: trees=%d\n", get_param<int>(cost.params,"trees"));
KDTreeIndex<Distance> kdtree(sampledDataset_, cost.params, distance_);
t.start();
kdtree.buildIndex();
t.stop();
float buildTime = (float)t.value;
//measure search time
float searchTime = test_index_precision(kdtree, sampledDataset_, testDataset_, gt_matches_, target_precision_, checks, distance_, nn);
float datasetMemory = float(sampledDataset_.rows * sampledDataset_.cols * sizeof(float));
cost.memoryCost = (kdtree.usedMemory() + datasetMemory) / datasetMemory;
cost.searchTimeCost = searchTime;
cost.buildTimeCost = buildTime;
Logger::info("KDTree buildTime=%g, searchTime=%g\n", buildTime, searchTime);
}
// struct KMeansSimpleDownhillFunctor {
//
// Autotune& autotuner;
// KMeansSimpleDownhillFunctor(Autotune& autotuner_) : autotuner(autotuner_) {};
//
// float operator()(int* params) {
//
// float maxFloat = numeric_limits<float>::max();
//
// if (params[0]<2) return maxFloat;
// if (params[1]<0) return maxFloat;
//
// CostData c;
// c.params["algorithm"] = KMEANS;
// c.params["centers-init"] = CENTERS_RANDOM;
// c.params["branching"] = params[0];
// c.params["max-iterations"] = params[1];
//
// autotuner.evaluate_kmeans(c);
//
// return c.timeCost;
//
// }
// };
//
// struct KDTreeSimpleDownhillFunctor {
//
// Autotune& autotuner;
// KDTreeSimpleDownhillFunctor(Autotune& autotuner_) : autotuner(autotuner_) {};
//
// float operator()(int* params) {
// float maxFloat = numeric_limits<float>::max();
//
// if (params[0]<1) return maxFloat;
//
// CostData c;
// c.params["algorithm"] = KDTREE;
// c.params["trees"] = params[0];
//
// autotuner.evaluate_kdtree(c);
//
// return c.timeCost;
//
// }
// };
void optimizeKMeans(std::vector<CostData>& costs)
{
Logger::info("KMEANS, Step 1: Exploring parameter space\n");
// explore kmeans parameters space using combinations of the parameters below
int maxIterations[] = { 1, 5, 10, 15 };
int branchingFactors[] = { 16, 32, 64, 128, 256 };
int kmeansParamSpaceSize = FLANN_ARRAY_LEN(maxIterations) * FLANN_ARRAY_LEN(branchingFactors);
costs.reserve(costs.size() + kmeansParamSpaceSize);
// evaluate kmeans for all parameter combinations
for (size_t i = 0; i < FLANN_ARRAY_LEN(maxIterations); ++i) {
for (size_t j = 0; j < FLANN_ARRAY_LEN(branchingFactors); ++j) {
CostData cost;
cost.params["algorithm"] = FLANN_INDEX_KMEANS;
cost.params["centers_init"] = FLANN_CENTERS_RANDOM;
cost.params["iterations"] = maxIterations[i];
cost.params["branching"] = branchingFactors[j];
evaluate_kmeans(cost);
costs.push_back(cost);
}
}
// Logger::info("KMEANS, Step 2: simplex-downhill optimization\n");
//
// const int n = 2;
// // choose initial simplex points as the best parameters so far
// int kmeansNMPoints[n*(n+1)];
// float kmeansVals[n+1];
// for (int i=0;i<n+1;++i) {
// kmeansNMPoints[i*n] = (int)kmeansCosts[i].params["branching"];
// kmeansNMPoints[i*n+1] = (int)kmeansCosts[i].params["max-iterations"];
// kmeansVals[i] = kmeansCosts[i].timeCost;
// }
// KMeansSimpleDownhillFunctor kmeans_cost_func(*this);
// // run optimization
// optimizeSimplexDownhill(kmeansNMPoints,n,kmeans_cost_func,kmeansVals);
// // store results
// for (int i=0;i<n+1;++i) {
// kmeansCosts[i].params["branching"] = kmeansNMPoints[i*2];
// kmeansCosts[i].params["max-iterations"] = kmeansNMPoints[i*2+1];
// kmeansCosts[i].timeCost = kmeansVals[i];
// }
}
void optimizeKDTree(std::vector<CostData>& costs)
{
Logger::info("KD-TREE, Step 1: Exploring parameter space\n");
// explore kd-tree parameters space using the parameters below
int testTrees[] = { 1, 4, 8, 16, 32 };
// evaluate kdtree for all parameter combinations
for (size_t i = 0; i < FLANN_ARRAY_LEN(testTrees); ++i) {
CostData cost;
cost.params["trees"] = testTrees[i];
evaluate_kdtree(cost);
costs.push_back(cost);
}
// Logger::info("KD-TREE, Step 2: simplex-downhill optimization\n");
//
// const int n = 1;
// // choose initial simplex points as the best parameters so far
// int kdtreeNMPoints[n*(n+1)];
// float kdtreeVals[n+1];
// for (int i=0;i<n+1;++i) {
// kdtreeNMPoints[i] = (int)kdtreeCosts[i].params["trees"];
// kdtreeVals[i] = kdtreeCosts[i].timeCost;
// }
// KDTreeSimpleDownhillFunctor kdtree_cost_func(*this);
// // run optimization
// optimizeSimplexDownhill(kdtreeNMPoints,n,kdtree_cost_func,kdtreeVals);
// // store results
// for (int i=0;i<n+1;++i) {
// kdtreeCosts[i].params["trees"] = kdtreeNMPoints[i];
// kdtreeCosts[i].timeCost = kdtreeVals[i];
// }
}
/**
* Chooses the best nearest-neighbor algorithm and estimates the optimal
* parameters to use when building the index (for a given precision).
* Returns a dictionary with the optimal parameters.
*/
IndexParams estimateBuildParams()
{
std::vector<CostData> costs;
int sampleSize = int(sample_fraction_ * dataset_.rows);
int testSampleSize = std::min(sampleSize / 10, 1000);
Logger::info("Entering autotuning, dataset size: %d, sampleSize: %d, testSampleSize: %d, target precision: %g\n", dataset_.rows, sampleSize, testSampleSize, target_precision_);
// For a very small dataset, it makes no sense to build any fancy index, just
// use linear search
if (testSampleSize < 10) {
Logger::info("Choosing linear, dataset too small\n");
return LinearIndexParams();
}
// We use a fraction of the original dataset to speedup the autotune algorithm
sampledDataset_ = random_sample(dataset_, sampleSize);
// We use a cross-validation approach, first we sample a testset from the dataset
testDataset_ = random_sample(sampledDataset_, testSampleSize, true);
// We compute the ground truth using linear search
Logger::info("Computing ground truth... \n");
gt_matches_ = Matrix<int>(new int[testDataset_.rows], testDataset_.rows, 1);
StartStopTimer t;
t.start();
compute_ground_truth<Distance>(sampledDataset_, testDataset_, gt_matches_, 0, distance_);
t.stop();
CostData linear_cost;
linear_cost.searchTimeCost = (float)t.value;
linear_cost.buildTimeCost = 0;
linear_cost.memoryCost = 0;
linear_cost.params["algorithm"] = FLANN_INDEX_LINEAR;
costs.push_back(linear_cost);
// Start parameter autotune process
Logger::info("Autotuning parameters...\n");
optimizeKMeans(costs);
optimizeKDTree(costs);
float bestTimeCost = costs[0].searchTimeCost;
for (size_t i = 0; i < costs.size(); ++i) {
float timeCost = costs[i].buildTimeCost * build_weight_ + costs[i].searchTimeCost;
if (timeCost < bestTimeCost) {
bestTimeCost = timeCost;
}
}
float bestCost = costs[0].searchTimeCost / bestTimeCost;
IndexParams bestParams = costs[0].params;
if (bestTimeCost > 0) {
for (size_t i = 0; i < costs.size(); ++i) {
float crtCost = (costs[i].buildTimeCost * build_weight_ + costs[i].searchTimeCost) / bestTimeCost +
memory_weight_ * costs[i].memoryCost;
if (crtCost < bestCost) {
bestCost = crtCost;
bestParams = costs[i].params;
}
}
}
delete[] gt_matches_.data;
delete[] testDataset_.data;
delete[] sampledDataset_.data;
return bestParams;
}
/**
* Estimates the search time parameters needed to get the desired precision.
* Precondition: the index is built
* Postcondition: the searchParams will have the optimum params set, also the speedup obtained over linear search.
*/
float estimateSearchParams(SearchParams& searchParams)
{
const int nn = 1;
const size_t SAMPLE_COUNT = 1000;
assert(bestIndex_ != NULL); // must have a valid index
float speedup = 0;
int samples = (int)std::min(dataset_.rows / 10, SAMPLE_COUNT);
if (samples > 0) {
Matrix<ElementType> testDataset = random_sample(dataset_, samples);
Logger::info("Computing ground truth\n");
// we need to compute the ground truth first
Matrix<int> gt_matches(new int[testDataset.rows], testDataset.rows, 1);
StartStopTimer t;
t.start();
compute_ground_truth<Distance>(dataset_, testDataset, gt_matches, 1, distance_);
t.stop();
float linear = (float)t.value;
int checks;
Logger::info("Estimating number of checks\n");
float searchTime;
float cb_index;
if (bestIndex_->getType() == FLANN_INDEX_KMEANS) {
Logger::info("KMeans algorithm, estimating cluster border factor\n");
KMeansIndex<Distance>* kmeans = (KMeansIndex<Distance>*)bestIndex_;
float bestSearchTime = -1;
float best_cb_index = -1;
int best_checks = -1;
for (cb_index = 0; cb_index < 1.1f; cb_index += 0.2f) {
kmeans->set_cb_index(cb_index);
searchTime = test_index_precision(*kmeans, dataset_, testDataset, gt_matches, target_precision_, checks, distance_, nn, 1);
if ((searchTime < bestSearchTime) || (bestSearchTime == -1)) {
bestSearchTime = searchTime;
best_cb_index = cb_index;
best_checks = checks;
}
}
searchTime = bestSearchTime;
cb_index = best_cb_index;
checks = best_checks;
kmeans->set_cb_index(best_cb_index);
Logger::info("Optimum cb_index: %g\n", cb_index);
bestParams_["cb_index"] = cb_index;
}
else {
searchTime = test_index_precision(*bestIndex_, dataset_, testDataset, gt_matches, target_precision_, checks, distance_, nn, 1);
}
Logger::info("Required number of checks: %d \n", checks);
searchParams["checks"] = checks;
speedup = linear / searchTime;
delete[] gt_matches.data;
delete[] testDataset.data;
}
return speedup;
}
private:
NNIndex<Distance>* bestIndex_;
IndexParams bestParams_;
SearchParams bestSearchParams_;
Matrix<ElementType> sampledDataset_;
Matrix<ElementType> testDataset_;
Matrix<int> gt_matches_;
float speedup_;
/**
* The dataset used by this index
*/
const Matrix<ElementType> dataset_;
/**
* Index parameters
*/
float target_precision_;
float build_weight_;
float memory_weight_;
float sample_fraction_;
Distance distance_;
};
}
#endif /* OPENCV_FLANN_AUTOTUNED_INDEX_H_ */